Methodology papers:

Kakajan Komurov, Michael A. White and Prahlad T. Ram (2010). Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data. PLoS Computational Biology.6(8): e1000889. Link
Komurov K, Dursun S, Erdin S, Ram PT (2012). NetWalker: a contextual network analysis tool for functional genomics. BMC Genomics2012 Jun 25;13(1):282

Publications using NetWalk or NetWalker:

Komurov K, Tseng JT, Muller M, Seviour EG, Moss TJ, Yang L, Nagrath D, Ram PT (2012). The glucose-deprivation network counteracts lapatinib-induced toxicity in resistant ErbB2-positive breast cancer cells. Mol Syst Biol. Jul 31;8:596 (link)
Zhang L, Komurov K, Wright WE, Shay JW (2012). Identification of novel driver tumor suppressors through functional interrogation of putative passenger mutations in colorectal cancer. Int J Cancer. Jun 30. doi: 10.1002/ijc.27705
Komurov, K (2012). Modeling Community-wide Molecular Networks of Multicellular Systems. Bioinformatics. 28(5): 694-700. Link
Koji Matsuo, Masato Nishimura, Rebecca L. Stone, Kakajan Komurov, et al (2011). Targeting Src in Mucinous Ovarian Carcinoma. Clin Cancer Res. 2011 Jul 7.Link
Ugur Eskiocak, Sang Bum Kim, Peter Ly, Andres I. Roig, Sebastian Biglione, Kakajan Komurov, Crystal Cornelius, Woodring E. Wright, Michael A. White, and Jerry W. Shay (2011). Functional parsing of driver mutations in the colorectal cancer genome reveals numerous suppressors of anchorage-independent growth. Cancer Res. 2011 Jul 1. Link
Kakajan Komurov, David Padron, Tzuling Cheng, Michael Roth, Kevin Rosenblatt and Michael White (2010).Comprehensive mapping of the human kinome to EGF Receptor signaling. Journal of Biological Chemistry. Jul 2;285(27):21134-42. Link